User Tools

Site Tools


fastqc-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
fastqc-software [2017/02/05 09:37]
joguya
fastqc-software [2018/09/28 12:22] (current)
aorth
Line 4: Line 4:
 ===== Information ===== ===== Information =====
  
-  * Latest version: 0.11.5+  * Latest version: 0.11.7
   * Added: December, 2014   * Added: December, 2014
-  * Updated: February2017+  * Updated: September2018
   * Link: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/   * Link: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
  
 ===== Usage ===== ===== Usage =====
  
-=== See versions of fastqc which are available ===+See versions of fastqc which are available:
 <code>$ module avail fastqc</code> <code>$ module avail fastqc</code>
  
-=== Load and run === +Load one version into your environment and run it: 
-<code>$ module load fastqc/0.11.5+<code>$ module load fastqc/0.11.7
 $ fastqc</code> $ fastqc</code>
  
Line 21: Line 21:
 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code> +<code>$ cd /tmp 
-$ cd /tmp +$ wget http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.7.zip 
-$ wget http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.5.zip +$ unzip fastqc_v0.11.7.zip 
-$ unzip fastqc_v0.11.5.zip +sudo cp -r FastQC /export/apps/fastqc/0.11.7 
-cd FastQC+$ sudo chmod +x /export/apps/fastqc/0.11.7/fastqc</code>
-$ sed -i 's#/usr/bin/perl#/usr/bin/env perl#' fastqc +
-$ chmod +x fastqc +
-$ sudo mkdir /export/apps/fastqc/0.11.5/ +
-$ sudo cp -r . /export/apps/fastqc/0.11.5/ +
-</code>+
fastqc-software.1486287456.txt.gz · Last modified: 2017/02/05 09:37 by joguya