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fastqc-software [2017/02/05 09:37]
joguya
fastqc-software [2021/12/15 07:39] (current)
aorth
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 ===== Information ===== ===== Information =====
  
-  * Latest version: 0.11.5+  * Latest version: 0.11.9
   * Added: December, 2014   * Added: December, 2014
-  * Updated: February2017+  * Updated: December2021
   * Link: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/   * Link: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
  
 ===== Usage ===== ===== Usage =====
  
-=== See versions of fastqc which are available ===+See versions of fastqc which are available:
 <code>$ module avail fastqc</code> <code>$ module avail fastqc</code>
  
-=== Load and run === +Load one version into your environment and run it: 
-<code>$ module load fastqc/0.11.5+<code>$ module load fastqc/0.11.9
 $ fastqc</code> $ fastqc</code>
  
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 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code> +<code>$ cd /tmp 
-$ cd /tmp +$ wget http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.9.zip 
-$ wget http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.5.zip +$ unzip fastqc_v0.11.9.zip 
-$ unzip fastqc_v0.11.5.zip +sudo cp -r FastQC /export/apps/fastqc/0.11.9 
-cd FastQC+$ sudo chmod +x /export/apps/fastqc/0.11.9/fastqc</code>
-$ sed -i 's#/usr/bin/perl#/usr/bin/env perl#' fastqc +
-$ chmod +x fastqc +
-$ sudo mkdir /export/apps/fastqc/0.11.5/ +
-$ sudo cp -r . /export/apps/fastqc/0.11.5/ +
-</code>+
fastqc-software.1486287456.txt.gz · Last modified: 2017/02/05 09:37 by joguya