User Tools

Site Tools


fastqc-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
fastqc-software [2017/02/05 12:37]
joguya
fastqc-software [2018/09/28 15:22] (current)
aorth
Line 4: Line 4:
 ===== Information ===== ===== Information =====
  
-  * Latest version: 0.11.5+  * Latest version: 0.11.7
   * Added: December, 2014   * Added: December, 2014
-  * Updated: ​February2017+  * Updated: ​September2018
   * Link: http://​www.bioinformatics.babraham.ac.uk/​projects/​fastqc/​   * Link: http://​www.bioinformatics.babraham.ac.uk/​projects/​fastqc/​
  
 ===== Usage ===== ===== Usage =====
  
-=== See versions of fastqc which are available ​===+See versions of fastqc which are available:
 <​code>​$ module avail fastqc</​code>​ <​code>​$ module avail fastqc</​code>​
  
-=== Load and run === +Load one version into your environment ​and run it: 
-<​code>​$ module load fastqc/​0.11.5+<​code>​$ module load fastqc/​0.11.7
 $ fastqc</​code>​ $ fastqc</​code>​
  
Line 21: Line 21:
 Notes from the sysadmin during installation:​ Notes from the sysadmin during installation:​
  
-<​code>​ +<​code>​$ cd /tmp 
-$ cd /tmp +$ wget http://​www.bioinformatics.babraham.ac.uk/​projects/​fastqc/​fastqc_v0.11.7.zip 
-$ wget http://​www.bioinformatics.babraham.ac.uk/​projects/​fastqc/​fastqc_v0.11.5.zip +$ unzip fastqc_v0.11.7.zip 
-$ unzip fastqc_v0.11.5.zip +sudo cp -r FastQC /​export/​apps/​fastqc/​0.11.7 
-cd FastQC+$ sudo chmod +x /​export/​apps/​fastqc/​0.11.7/fastqc</​code>​
-$ sed -i '​s#/​usr/​bin/​perl#/​usr/​bin/​env perl#' fastqc +
-$ chmod +x fastqc +
-$ sudo mkdir /​export/​apps/​fastqc/​0.11.5/ +
-$ sudo cp -r . /​export/​apps/​fastqc/​0.11.5/ +
-</​code>​+
fastqc-software.1486287456.txt.gz · Last modified: 2017/02/05 12:37 by joguya