Differences

This shows you the differences between two versions of the page.

--- fastqc-software [2017/02/05 09:37]
joguya
+++ fastqc-software [2018/09/28 12:22] (current)
aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Latest version: 0.11.5
+  * Latest version: 0.11.7
   * Added: December, 2014
-  * Updated: February, 2017
+  * Updated: September, 2018
   * Link: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
 ===== Usage =====
-=== See versions of fastqc which are available ===
+See versions of fastqc which are available:
 <code>$ module avail fastqc</code>
-=== Load and run ===
+Load one version into your environment and run it:
-<code>$ module load fastqc/0.11.5
+<code>$ module load fastqc/0.11.7
 $ fastqc</code>
@@ Line 21: / Line 21: @@
 Notes from the sysadmin during installation:
-<code>
+<code>$ cd /tmp
-$ cd /tmp
+$ wget http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.7.zip
-$ wget http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.5.zip
+$ unzip fastqc_v0.11.7.zip
-$ unzip fastqc_v0.11.5.zip
+$ sudo cp -r FastQC /export/apps/fastqc/0.11.7
-$ cd FastQC/
+$ sudo chmod +x /export/apps/fastqc/0.11.7/fastqc</code>
-$ sed -i 's#/usr/bin/perl#/usr/bin/env perl#' fastqc
-$ chmod +x fastqc
-$ sudo mkdir /export/apps/fastqc/0.11.5/
-$ sudo cp -r . /export/apps/fastqc/0.11.5/
-</code>

ILRI Research Computing