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fastqc-software

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fastqc

A quality control tool for high throughput sequence data.

Information

Usage

See versions of fastqc which are available

$ module avail fastqc

Load and run

$ module load fastqc/0.11.5
$ fastqc

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.5.zip
$ unzip fastqc_v0.11.5.zip
$ cd FastQC/
$ sed -i 's#/usr/bin/perl#/usr/bin/env perl#' fastqc
$ chmod +x fastqc
$ sudo mkdir /export/apps/fastqc/0.11.5/
$ sudo cp -r . /export/apps/fastqc/0.11.5/
fastqc-software.txt · Last modified: 2017/02/05 12:37 by joguya