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emboss-software [2015/09/04 15:16]
aorth [Usage]
emboss-software [2017/12/24 17:08] (current)
aorth
Line 9: Line 9:
 ===== Usage ===== ===== Usage =====
  
-=== See versions of emboss which are available ​===+See versions of emboss which are available:
 <​code>​$ module avail emboss</​code>​ <​code>​$ module avail emboss</​code>​
 +
 +Load one version into your environment:​
 +<​code>​$ module load emboss/​6.6.0</​code>​
  
 ===== Installation ====== ===== Installation ======
 Notes from the sysadmin during installation:​ Notes from the sysadmin during installation:​
  
-<​code>​sudo yum install libpng-devel gd-devel zlib-devel +<​code>​$ cd /tmp 
-scl enable devtoolset-1.1 bash +wget ftp://​emboss.open-bio.org/​pub/​EMBOSS/​EMBOSS-6.6.0.tar.gz 
-wget ftp://​emboss.open-bio.org/​pub/​EMBOSS/​EMBOSS-6.6.0.tar.gz +tar xf EMBOSS-6.6.0.tar.gz 
-tar xf EMBOSS-6.6.0.tar.gz ​-C /tmp +cd EMBOSS-6.6.0 
-cd /tmp/EMBOSS-6.6.0 +./configure --prefix=/​export/​apps/​emboss/​6.6.0 
-./configure --prefix=/​export/​apps/​emboss/​6.6.0 +make -j4 
-make -j4 +$ sudo mv /​export/​apps/​emboss/​6.6.0 /​export/​apps/​emboss/​6.6.0.old 
-sudo mkdir /​export/​apps/​emboss/​6.6.0 +sudo mkdir /​export/​apps/​emboss/​6.6.0 
-sudo chown aorth:aorth /​export/​apps/​emboss/​6.6.0 +sudo chown aorth:aorth /​export/​apps/​emboss/​6.6.0 
-make install +make install 
-sudo chown -R root:root /​export/​apps/​emboss/​6.6.0</​code>​+sudo chown -R root:root /​export/​apps/​emboss/​6.6.0</​code>​
emboss-software.txt · Last modified: 2017/12/24 17:08 by aorth