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EASER

EASER(Ensembl Easy Sequence Retriever) is a python program based in PyCogent library for the homology-based retrieval of several sequence data types from Ensembl.

Information

Usage

See which versions of easer are available:

$ module avail easer

Load easer

$ module load easer/1.7.0

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ scl enable devtoolset-2 bash
"http://downloads.sourceforge.net/project/easer/Generic/EASERv1.7.0.zip?r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Feaser%2F&ts=1463986565&use_mirror=tenet" -O easerv1.7.0.zip
$ unzip easerv1.7.0.zip 
$ cd EASER_v1.7.0/
$ sed -i "1s/.*/\#\!\/usr\/bin\/env python/" easer.py
$ sudo mkdir -p /export/apps/easer/1.7.0/
$ sudo cp -r . /export/apps/easer/1.7.0/
easer-software.txt · Last modified: 2016/05/23 10:35 by joguya