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ea-utils-software [2015/10/08 15:51]
joguya
ea-utils-software [2018/11/18 12:14] (current)
aorth
Line 1: Line 1:
 ====== ea-utils ====== ====== ea-utils ======
-FASTQ processing ​utilities.+Command-line tools for processing ​biological sequencing data. Barcode demultiplexing,​ adapter trimming, etc. Primarily written to support an Illumina based pipeline - but should work with any FASTQs.
  
 ===== Information ===== ===== Information =====
  
-  * Version: 1.1.2+  * Version: 1.04.807
   * Added: October, 2015   * Added: October, 2015
-  * Link: https://code.google.com/p/ea-utils/+  ​* Updated: November, 2018 
 +  ​* Link: https://expressionanalysis.github.io/ea-utils/
  
 ===== Usage ===== ===== Usage =====
  
-See versions of ea-utils which are available:+See available ​versions:
 <​code>​$ module avail ea-utils</​code>​ <​code>​$ module avail ea-utils</​code>​
  
-Load ea-utils+Load one version into your environment
-<​code>​$ module load ea-utils/1.1.+<​code>​$ module load ea-utils/1.04.807</​code>​
-</​code>​+
  
 ===== Installation ====== ===== Installation ======
 Notes from the sysadmin during installation:​ Notes from the sysadmin during installation:​
  
-<​code>​ +<​code>​$ cd /tmp 
-$ wget "https://drive.google.com/uc?​id=0B7KhouP0YeRAc2xackxzRnFrUEU&​export=download"​ -O ea-utils.1.1.2-806.tar.gz +$ wget https://github.com/ExpressionAnalysis/​ea-utils/archive/1.04.807.tar.gz 
-tar -xvf ea-utils.1.1.2-806.tar.gz +sudo yum install gsl-devel perl-Test-Base 
-$ cd ea-utils.1.1.2-806 +$ tar xf 1.04.807.tar.gz 
-scl enable devtoolset-2 bash +$ cd ea-utils-1.04.807/clipper 
-$ module load samtools/​1.2 +make 
-$ sudo mkdir -p /​export/​apps/​ea-utils/​1.1.2 +$ sudo mkdir -p /​export/​apps/​ea-utils/​1.04.807 
-$ sudo chown -R joguya:​joguya ​/​export/​apps/​ea-utils/​1.1.+$ sudo chown aorth /​export/​apps/​ea-utils/​1.04.807 
-$ module load perl/​5.16.3.1603 +make install ​PREFIX=/​export/​apps/​ea-utils/​1.04.807 
-$ PREFIX=/​export/​apps/​ea-utils/​1.1.2 make install +$ sudo yum remove gsl-devel perl-Test-Base 
-$ sudo chown -R root:root /​export/​apps/​ea-utils/​1.1.+$ sudo chown -R root:root /​export/​apps/​ea-utils/​1.04.807</​code>​
-</​code>​+
ea-utils-software.1444308705.txt.gz · Last modified: 2015/10/08 15:51 by joguya