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ea-utils-software [2015/10/08 15:49]
joguya [Usage]
ea-utils-software [2015/10/08 15:51] (current)
joguya
Line 1: Line 1:
-====== ​pairfq ​====== +====== ​ea-utils ​====== 
-Sync paired-end FASTA/Q files and keep singleton reads.+FASTQ processing utilities.
  
 ===== Information ===== ===== Information =====
  
-  * Version: ​0.14.4+  * Version: ​1.1.2
   * Added: October, 2015   * Added: October, 2015
-  * Link: https://github.com/sestaton/Pairfq+  * Link: https://code.google.com/p/ea-utils/
  
 ===== Usage ===== ===== Usage =====
  
-See versions of pairfq ​which are available:​ +See versions of ea-utils ​which are available:​ 
-<​code>​$ module avail pairfq</​code>​+<​code>​$ module avail ea-utils</​code>​
  
-Load and run pairfq+Load ea-utils
-<​code>​$ module load pairfq/0.14.4 +<​code>​$ module load ea-utils/1.1.2 
-$ pairfq</​code>​+</​code>​
  
 ===== Installation ====== ===== Installation ======
 Notes from the sysadmin during installation:​ Notes from the sysadmin during installation:​
  
-<​code>​$ wget https://github.com/sestaton/​Pairfq/​archive/​v0.14.4.tar.gz +<​code>​ 
-$ tar -xvf v0.14.4.tar.gz +$ wget "https://drive.google.com/uc?​id=0B7KhouP0YeRAc2xackxzRnFrUEU&​export=download"​ -O ea-utils.1.1.2-806.tar.gz 
-$ cd Pairfq-0.14.4 +$ tar -xvf ea-utils.1.1.2-806.tar.gz 
-$ sudo mkdir -p /​export/​apps/​pairfq/0.14.4 +$ cd ea-utils.1.1.2-806 
-$ sudo chown -R joguya:​joguya /​export/​apps/​pairfq/0.14.4+$ scl enable devtoolset-2 bash 
 +$ module load samtools/​1.2 
 +$ sudo mkdir -p /​export/​apps/​ea-utils/1.1.2 
 +$ sudo chown -R joguya:​joguya /​export/​apps/​ea-utils/1.1.2
 $ module load perl/​5.16.3.1603 $ module load perl/​5.16.3.1603
-perl Makefile.PL ​PREFIX=/​export/​apps/​pairfq/0.14.+$ PREFIX=/​export/​apps/​ea-utils/1.1.make install 
-$ make +$ sudo chown -R root:root /​export/​apps/​ea-utils/1.1.2
-$ make test +
-make install +
-$ sudo chown -R root:root /​export/​apps/​pairfq/0.14.4+
 </​code>​ </​code>​
ea-utils-software.txt · Last modified: 2015/10/08 15:51 by joguya