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ea-utils-software

ea-utils

Command-line tools for processing biological sequencing data. Barcode demultiplexing, adapter trimming, etc. Primarily written to support an Illumina based pipeline - but should work with any FASTQs.

Information

Usage

See available versions:

$ module avail ea-utils

Load one version into your environment:

$ module load ea-utils/1.04.807

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/ExpressionAnalysis/ea-utils/archive/1.04.807.tar.gz
$ sudo yum install gsl-devel perl-Test-Base
$ tar xf 1.04.807.tar.gz
$ cd ea-utils-1.04.807/clipper
$ make
$ sudo mkdir -p /export/apps/ea-utils/1.04.807
$ sudo chown aorth /export/apps/ea-utils/1.04.807
$ make install PREFIX=/export/apps/ea-utils/1.04.807
$ sudo yum remove gsl-devel perl-Test-Base
$ sudo chown -R root:root /export/apps/ea-utils/1.04.807
ea-utils-software.txt · Last modified: 2018/11/18 12:14 by aorth