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drep-software [2020/03/12 17:21] (current)
aorth created
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 +====== drep ======
  
 +dRep is a python program for rapidly comparing large numbers of genomes. dRep can also "​de-replicate"​ a genome set by identifying groups of highly similar genomes and choosing the best representative genome for each genome set.
 +
 +===== Information =====
 +
 +  * Version: 2.5.4
 +  * Added: March, 2020
 +  * Link: https://​github.com/​MrOlm/​drep
 +
 +===== Usage =====
 +
 +See which versions of drep are available:
 +<​code>​$ module avail drep</​code>​
 +
 +Load one version into your environment and run it:
 +<​code>​$ module load drep/2.5.4
 +$ drep</​code>​
 +
 +===== Installation ======
 +
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ cd /tmp
 +$ sudo mkdir -p /​export/​apps/​drep/​2.5.4
 +$ sudo chown aorth /​export/​apps/​drep/​2.5.4
 +$ python3.6 -m venv /​export/​apps/​drep/​2.5.4
 +$ source /​export/​apps/​drep/​2.5.4/​bin/​activate
 +$ pip install --upgrade pip setuptools
 +$ pip install drep==2.5.4
 +$ sudo chown -R root:root /​export/​apps/​drep/​2.5.4</​code>​
drep-software.txt · Last modified: 2020/03/12 17:21 by aorth