User Tools

Site Tools


dextractor-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

dextractor-software [2018/11/10 19:08] (current)
aorth created
Line 1: Line 1:
 +====== dextractor ======
 +Bax File Decoder and Data Compressor.
  
 +===== Information =====
 +
 +  * Version: git-a7f50c52 (developer does not tag proper release versions)
 +  * Added: November, 2018
 +  * Link: https://​github.com/​PacificBiosciences/​DEXTRACTOR
 +
 +===== Usage =====
 +See versions of dextractor which are available:
 +
 +<​code>​$ module avail dextractor</​code>​
 +
 +Load one version into your environment and run it:
 +<​code>​$ module load dextractor/​git-a7f50c52
 +$ dextract</​code>​
 +
 +===== Installation ======
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ cd /tmp
 +$ git clone https://​github.com/​PacificBiosciences/​DEXTRACTOR.git
 +$ sed -i '​s/​PATH_HDF5 = \/​usr\/​local\/​hdf5/​PATH_HDF5 = \/​export\/​apps\/​hdf5\/​1.8.15-patch1/'​ Makefile
 +$ make -f Makefile
 +$ sudo mkdir -p /​export/​apps/​dextractor/​git-a7f50c52/​bin
 +$ sudo cp dextract dexta undexta dexar undexar dexqv undexqv dex2DB /​export/​apps/​dextractor/​git-a7f50c52/​bin
 +$ sudo cp LICENSE README.md DISCLAIMER /​export/​apps/​dextractor/​git-a7f50c52</​code>​
dextractor-software.txt · Last modified: 2018/11/10 19:08 by aorth