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coperead-software [2017/02/08 16:49] (current)
joguya created
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 +====== COPEread ======
 +
 +COPE (Connecting Overlapped Pair-End reads) is a method to align and connect the illumina sequenced Pair-End reads of which the insert size is smaller than the sum of the two read length.
 +
 +===== Information =====
 +
 +  * Latest Version: 1.1.2
 +  * Added: February, 2017
 +  * Link: https://​sourceforge.net/​projects/​coperead/​
 +
 +===== Usage =====
 +
 +See versions of COPEread which are available:
 +<​code>​$ module avail coperead/​1.1.2</​code>​
 +
 +===== Installation ======
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ wget -qO- "​https://​downloads.sourceforge.net/​project/​coperead/​src/​cope-src-v1.1.2.tgz?​r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Fcoperead%2F&​ts=1486559606&​use_mirror=netix"​ | tar xzv
 +$ scl enable devtoolset-3 bash
 +$ sudo mkdir -p /​export/​apps/​coperead/​1.1.2/​
 +$ sudo chown -R joguya:​joguya /​export/​apps/​coperead/​1.1.2/​
 +$ chmod +x src/​cope/​configure
 +$ PREFIX=/​export/​apps/​cope/​1.1.2/​ make
 +$ PREFIX=/​export/​apps/​cope/​1.1.2/​ make install ​
 +$ sudo chown -R root:root /​export/​apps/​coperead/​1.1.2/</​code>​
  
coperead-software.txt · Last modified: 2017/02/08 16:49 by joguya