COPE (Connecting Overlapped Pair-End reads) is a method to align and connect the illumina sequenced Pair-End reads of which the insert size is smaller than the sum of the two read length.
See versions of COPEread which are available:
$ module avail coperead/1.1.2
Notes from the sysadmin during installation:
$ wget -qO- "https://downloads.sourceforge.net/project/coperead/src/cope-src-v1.1.2.tgz?r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Fcoperead%2F&ts=1486559606&use_mirror=netix" | tar xzv $ scl enable devtoolset-3 bash $ sudo mkdir -p /export/apps/coperead/1.1.2/ $ sudo chown -R joguya:joguya /export/apps/coperead/1.1.2/ $ chmod +x src/cope/configure $ PREFIX=/export/apps/cope/1.1.2/ make $ PREFIX=/export/apps/cope/1.1.2/ make install $ sudo chown -R root:root /export/apps/coperead/1.1.2/