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cnvnator-software [2017/05/16 18:41]
aorth [Installation]
cnvnator-software [2017/05/25 16:13] (current)
aorth
Line 10: Line 10:
 ===== Usage ===== ===== Usage =====
  
-See versions of cnvnator ​which are available:+See versions of CNVnator ​which are available:
 <​code>​$ module avail root</​code>​ <​code>​$ module avail root</​code>​
  
 Load and run root: Load and run root:
-<​code>​$ module load cnvnator/0.3.3+<​code>​$ module load CNVnator/0.3.3
 $ cnvnator</​code>​ $ cnvnator</​code>​
  
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 $ sudo cp cnvnator /​export/​apps/​CNVnator/​0.3.3</​code>​ $ sudo cp cnvnator /​export/​apps/​CNVnator/​0.3.3</​code>​
  
-Note: compiled on CentOS 7 because it needs root, which in turn needs quite a bit of modern dependencies. Recommend running from compute03.+Note: compiled on CentOS 7 because it needs root, which in turn needs quite a bit of modern dependencies. Recommend running from compute03. Also, I compiled with max contig size of 30000, see src/​HisMaker.cpp.
cnvnator-software.1494960081.txt.gz · Last modified: 2017/05/16 18:41 by aorth