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clonalframe-software [2015/09/16 12:54] (current)
joguya created
Line 1: Line 1:
 +====== ClonalFrame ======
 +ClonalFrame infers bacterial microevolution using multilocus sequence data.
  
 +===== Information =====
 +
 +  * Version: 1.2
 +  * Added: September, 2015
 +  * Link: http://​www.xavierdidelot.xtreemhost.com/​clonalframe.htm
 +
 +===== Usage =====
 +
 +See versions of ClonalFrame which are available:
 +<​code>​$ module avail clonalframe</​code>​
 +
 +Load and run ClonalFrame:​
 +<​code>​$ module load clonalframe/​1.2
 +$ ClonalFrame</​code>​
 +
 +===== Installation ======
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ cd /tmp
 +$ scl enable devtoolset-2 bash
 +$ wget http://​www.stats.ox.ac.uk/​~didelot/​files/​ClonalFrame-1.2-Lin.zip
 +$ unzip ClonalFrame-1.2-Lin.zip
 +$ chmod 0755 ClonalFrame
 +$ sudo mkdir -p /​export/​apps/​clonalframe/​1.2
 +$ sudo cp ClonalFrame /​export/​apps/​clonalframe/​1.2/​
 +</​code>​
clonalframe-software.txt · Last modified: 2015/09/16 12:54 by joguya