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changeo-software [2017/05/31 11:29]
aorth
changeo-software [2017/11/06 19:35] (current)
aorth
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 ===== Information ===== ===== Information =====
  
-  * Version: 0.3.5+  * Version: 0.3.9
   * Added: September, 2016   * Added: September, 2016
-  * Updated: ​May, 2017+  * Updated: ​November, 2017
   * Link: http://​changeo.readthedocs.io/​en/​latest/​overview.html   * Link: http://​changeo.readthedocs.io/​en/​latest/​overview.html
  
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 Load changeo into your environment:​ Load changeo into your environment:​
-<​code>​$ module load changeo/​0.3.5</​code>​+<​code>​$ module load changeo/​0.3.9</​code>​
  
 ===== Installation ====== ===== Installation ======
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 Notes from the sysadmin during installation:​ Notes from the sysadmin during installation:​
  
-<​code>​$ ​scl enable devtoolset-2 bash +<​code>​$ ​cd /tmp 
-$ module load python/3.4.3 +$ module load python/3.4.
-$ sudo mkdir /​export/​apps/​changeo/​0.3.5 +$ scl enable devtoolset-4 bash 
-$ sudo chown aorth /​export/​apps/​changeo/​0.3.5 +$ sudo mkdir /​export/​apps/​changeo/​0.3.9 
-$ python -m venv /​export/​apps/​changeo/​0.3.5 +$ sudo chown aorth /​export/​apps/​changeo/​0.3.9 
-$ . /​export/​apps/​changeo/​0.3.5/​bin/​activate +$ python -m venv /​export/​apps/​changeo/​0.3.9 
-pip install -U pip setuptools +$ . /​export/​apps/​changeo/​0.3.9/​bin/​activate 
-pip install -U numpy scipy pandas biopython +pip3 install -U pip setuptools 
-pip install -U changeo +pip3 install -U numpy scipy pandas biopython 
-$ sudo chown -R root:root /​export/​apps/​changeo/​0.3.5</​code>​ +pip3 install -U changeo 
- +$ sudo chown -R root:root /​export/​apps/​changeo/​0.3.9</​code>​
-Change-O requires presto, so either install it and all of its dependencies here as well, or just make sure the Change-O module also loads presto.+
changeo-software.txt · Last modified: 2017/11/06 19:35 by aorth