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changeo-software

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Change-O

Change-O is a collection of tools for processing the output of V(D)J alignment tools, assigning clonal clusters to immunoglobulin sequences, and reconstructing germline sequences.

Information

Usage

See which versions of changeo are available:

$ module avail changeo

Load changeo

$ module load changeo/0.3.3

Installation

Notes from the sysadmin during installation:

1$ cd /tmp
$ wget -qO - https://bitbucket.org/kleinstein/changeo/downloads/changeo-0.3.3.tar.gz | tar -xzv
$ chown -R joguya:joguya /export/apps/python/3.4.3/
$ cd changeo-0.3.3/
$ module load python/3.4.3
$ scl enable devtoolset-2 bash
$ sudo mkdir -p /export/apps/changeo/0.3.3/
$ sudo chown -R joguya:joguya /export/apps/changeo/0.3.3/
$ python setup.py build
$ python setup.py install --install-scripts=/export/apps/changeo/0.3.3/bin
$ sudo chown -R root:root /export/apps/changeo/0.3.3/ /export/apps/python/3.4.3/
changeo-software.1473502294.txt.gz · Last modified: 2016/09/10 13:11 by joguya