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changeo-software [2017/05/31 08:29]
aorth
changeo-software [2020/06/10 18:10]
aorth
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 ===== Information ===== ===== Information =====
  
-  * Version: 0.3.5+  * Version: 1.0.0
   * Added: September, 2016   * Added: September, 2016
-  * Updated: May2017 +  * Updated: June2020 
-  * Link: http://changeo.readthedocs.io/en/latest/overview.html+  * Link: https://changeo.readthedocs.io/en/latest/overview.html
  
 ===== Usage ===== ===== Usage =====
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 Load changeo into your environment: Load changeo into your environment:
-<code>$ module load changeo/0.3.5</code>+<code>$ module load changeo/1.0.0</code>
  
 ===== Installation ====== ===== Installation ======
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 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code>scl enable devtoolset-2 bash +<code>cd /tmp 
-$ module load python/3.4.3 +$ sudo python3 -m venv /export/apps/changeo/1.0.0 
-$ sudo mkdir /export/apps/changeo/0.3.5 +$ sudo chown -R aorth /export/apps/changeo/1.0.0 
-$ sudo chown aorth /export/apps/changeo/0.3.5 +source /export/apps/changeo/1.0.0/bin/activate 
-python -m venv /export/apps/changeo/0.3.5 +$ pip install changeo 
-$ . /export/apps/changeo/0.3.5/bin/activate +$ sudo chown -R root:root /export/apps/changeo/1.0.0</code>
-$ pip install -U pip setuptools +
-$ pip install -U numpy scipy pandas biopython +
-$ pip install -U changeo +
-$ sudo chown -R root:root /export/apps/changeo/0.3.5</code> +
- +
-Change-O requires presto, so either install it and all of its dependencies here as well, or just make sure the Change-O module also loads presto.+
changeo-software.txt · Last modified: 2020/06/10 18:10 by aorth