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changeo-software [2016/09/10 13:11]
joguya created
changeo-software [2017/11/06 19:35]
aorth
Line 5: Line 5:
 ===== Information ===== ===== Information =====
  
-  * Version: 0.3.3+  * Version: 0.3.9
   * Added: September, 2016   * Added: September, 2016
 +  * Updated: November, 2017
   * Link: http://​changeo.readthedocs.io/​en/​latest/​overview.html   * Link: http://​changeo.readthedocs.io/​en/​latest/​overview.html
  
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 <​code>​$ module avail changeo</​code>​ <​code>​$ module avail changeo</​code>​
  
-Load changeo +Load changeo ​into your environment:​ 
-<​code>​$ module load changeo/​0.3.3</​code>​+<​code>​$ module load changeo/​0.3.9</​code>​
  
 ===== Installation ====== ===== Installation ======
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 Notes from the sysadmin during installation:​ Notes from the sysadmin during installation:​
  
-<​code>​ +<​code>​$ cd /tmp 
-1$ cd /tmp +$ module load python/3.4.7 
-$ wget -qO - https://​bitbucket.org/​kleinstein/​changeo/​downloads/​changeo-0.3.3.tar.gz | tar -xzv +$ scl enable devtoolset-bash 
-$ chown -R joguya:​joguya /​export/​apps/​python/​3.4.3/​ +$ sudo mkdir /​export/​apps/​changeo/​0.3.9 
-$ cd changeo-0.3.3/​ +$ sudo chown aorth /​export/​apps/​changeo/​0.3.9 
-$ module load python/3.4.3 +$ python ​-m venv /​export/​apps/​changeo/​0.3.9 
-$ scl enable devtoolset-bash +$ . /​export/​apps/​changeo/​0.3.9/bin/activate 
-$ sudo mkdir -p /​export/​apps/​changeo/​0.3.3/ +$ pip3 install -U pip setuptools 
-$ sudo chown -R joguya:​joguya ​/​export/​apps/​changeo/​0.3.3/ +$ pip3 install -U numpy scipy pandas biopython 
-$ python ​setup.py build +$ pip3 install -U changeo 
-python setup.py install --install-scripts=/​export/​apps/​changeo/​0.3.3/bin +$ sudo chown -R root:root /​export/​apps/​changeo/​0.3.9</​code>​
-$ sudo chown -R root:root /​export/​apps/​changeo/​0.3.3/ /​export/​apps/​python/​3.4.3/​ +
-</​code>​+
changeo-software.txt · Last modified: 2017/11/06 19:35 by aorth