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changeo-software
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changeo-software [2016/09/10 10:11] joguya created |
changeo-software [2017/05/31 08:29] aorth |
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| ===== Information ===== | ===== Information ===== | ||
| - | * Version: 0.3.3 | + | * Version: 0.3.5 |
| * Added: September, 2016 | * Added: September, 2016 | ||
| + | * Updated: May, 2017 | ||
| * Link: http:// | * Link: http:// | ||
| Line 14: | Line 15: | ||
| < | < | ||
| - | Load changeo | + | Load changeo |
| - | < | + | < |
| ===== Installation ====== | ===== Installation ====== | ||
| Line 21: | Line 22: | ||
| Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
| - | < | + | < |
| - | 1$ cd /tmp | + | |
| - | $ wget -qO - https:// | + | |
| - | $ chown -R joguya: | + | |
| - | $ cd changeo-0.3.3/ | + | |
| $ module load python/ | $ module load python/ | ||
| - | $ scl enable devtoolset-2 bash | + | $ sudo mkdir / |
| - | $ sudo mkdir -p / | + | $ sudo chown aorth / |
| - | $ sudo chown -R joguya: | + | $ python |
| - | $ python | + | $ . / |
| - | $ python setup.py install --install-scripts=/ | + | $ pip install -U pip setuptools |
| - | $ sudo chown -R root:root / | + | $ pip install -U numpy scipy pandas biopython |
| - | </ | + | $ pip install -U changeo |
| + | $ sudo chown -R root:root / | ||
| + | |||
| + | Change-O requires presto, so either install it and all of its dependencies here as well, or just make sure the Change-O module also loads presto. | ||
changeo-software.txt · Last modified: 2020/06/10 18:10 by aorth
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