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changeo-software [2016/09/10 10:11]
joguya created
changeo-software [2017/05/31 08:29]
aorth
Line 5: Line 5:
 ===== Information ===== ===== Information =====
  
-  * Version: 0.3.3+  * Version: 0.3.5
   * Added: September, 2016   * Added: September, 2016
 +  * Updated: May, 2017
   * Link: http://changeo.readthedocs.io/en/latest/overview.html   * Link: http://changeo.readthedocs.io/en/latest/overview.html
  
Line 14: Line 15:
 <code>$ module avail changeo</code> <code>$ module avail changeo</code>
  
-Load changeo +Load changeo into your environment: 
-<code>$ module load changeo/0.3.3</code>+<code>$ module load changeo/0.3.5</code>
  
 ===== Installation ====== ===== Installation ======
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 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code> +<code>scl enable devtoolset-2 bash
-1cd /tmp +
-$ wget -qO - https://bitbucket.org/kleinstein/changeo/downloads/changeo-0.3.3.tar.gz | tar -xzv +
-$ chown -R joguya:joguya /export/apps/python/3.4.3/ +
-$ cd changeo-0.3.3/+
 $ module load python/3.4.3 $ module load python/3.4.3
-$ scl enable devtoolset-2 bash +$ sudo mkdir /export/apps/changeo/0.3.5 
-$ sudo mkdir -p /export/apps/changeo/0.3.3/ +$ sudo chown aorth /export/apps/changeo/0.3.5 
-$ sudo chown -R joguya:joguya /export/apps/changeo/0.3.3/ +$ python -m venv /export/apps/changeo/0.3.5 
-$ python setup.py build +$ . /export/apps/changeo/0.3.5/bin/activate 
-python setup.py install --install-scripts=/export/apps/changeo/0.3.3/bin +$ pip install -U pip setuptools 
-$ sudo chown -R root:root /export/apps/changeo/0.3.3/ /export/apps/python/3.4.3/ +$ pip install -U numpy scipy pandas biopython 
-</code>+$ pip install -U changeo 
 +$ sudo chown -R root:root /export/apps/changeo/0.3.5</code> 
 + 
 +Change-O requires presto, so either install it and all of its dependencies here as well, or just make sure the Change-O module also loads presto.
changeo-software.txt · Last modified: 2020/06/10 18:10 by aorth