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changeo-software [2016/09/10 13:11]
joguya created
changeo-software [2017/05/31 11:29]
aorth
Line 5: Line 5:
 ===== Information ===== ===== Information =====
  
-  * Version: 0.3.3+  * Version: 0.3.5
   * Added: September, 2016   * Added: September, 2016
 +  * Updated: May, 2017
   * Link: http://​changeo.readthedocs.io/​en/​latest/​overview.html   * Link: http://​changeo.readthedocs.io/​en/​latest/​overview.html
  
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 <​code>​$ module avail changeo</​code>​ <​code>​$ module avail changeo</​code>​
  
-Load changeo +Load changeo ​into your environment:​ 
-<​code>​$ module load changeo/​0.3.3</​code>​+<​code>​$ module load changeo/​0.3.5</​code>​
  
 ===== Installation ====== ===== Installation ======
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 Notes from the sysadmin during installation:​ Notes from the sysadmin during installation:​
  
-<​code>​ +<​code>​$ ​scl enable devtoolset-2 bash
-1cd /tmp +
-$ wget -qO - https://​bitbucket.org/​kleinstein/​changeo/​downloads/​changeo-0.3.3.tar.gz | tar -xzv +
-$ chown -R joguya:​joguya /​export/​apps/​python/​3.4.3/​ +
-$ cd changeo-0.3.3/+
 $ module load python/​3.4.3 $ module load python/​3.4.3
-$ scl enable devtoolset-2 bash +$ sudo mkdir /​export/​apps/​changeo/​0.3.5 
-$ sudo mkdir -p /​export/​apps/​changeo/​0.3.3/ +$ sudo chown aorth /​export/​apps/​changeo/​0.3.5 
-$ sudo chown -R joguya:​joguya ​/​export/​apps/​changeo/​0.3.3/ +$ python ​-m venv /​export/​apps/​changeo/​0.3.5 
-$ python ​setup.py build +$ . /​export/​apps/​changeo/​0.3.5/bin/activate 
-python setup.py install --install-scripts=/​export/​apps/​changeo/​0.3.3/bin +$ pip install -U pip setuptools 
-$ sudo chown -R root:root /​export/​apps/​changeo/​0.3.3/ /​export/​apps/​python/​3.4.3/​ +$ pip install -U numpy scipy pandas biopython 
-</​code>​+$ pip install -U changeo 
 +$ sudo chown -R root:root /​export/​apps/​changeo/​0.3.5</​code>​ 
 + 
 +Change-O requires presto, so either install it and all of its dependencies here as well, or just make sure the Change-O module also loads presto.
changeo-software.txt · Last modified: 2017/11/06 19:35 by aorth