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changeo-software
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changeo-software [2016/09/10 13:11] joguya created |
changeo-software [2017/05/31 11:29] aorth |
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| ===== Information ===== | ===== Information ===== | ||
| - | * Version: 0.3.3 | + | * Version: 0.3.5 |
| * Added: September, 2016 | * Added: September, 2016 | ||
| + | * Updated: May, 2017 | ||
| * Link: http://changeo.readthedocs.io/en/latest/overview.html | * Link: http://changeo.readthedocs.io/en/latest/overview.html | ||
| Line 14: | Line 15: | ||
| <code>$ module avail changeo</code> | <code>$ module avail changeo</code> | ||
| - | Load changeo | + | Load changeo into your environment: |
| - | <code>$ module load changeo/0.3.3</code> | + | <code>$ module load changeo/0.3.5</code> |
| ===== Installation ====== | ===== Installation ====== | ||
| Line 21: | Line 22: | ||
| Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
| - | <code> | + | <code>$ scl enable devtoolset-2 bash |
| - | 1$ cd /tmp | + | |
| - | $ wget -qO - https://bitbucket.org/kleinstein/changeo/downloads/changeo-0.3.3.tar.gz | tar -xzv | + | |
| - | $ chown -R joguya:joguya /export/apps/python/3.4.3/ | + | |
| - | $ cd changeo-0.3.3/ | + | |
| $ module load python/3.4.3 | $ module load python/3.4.3 | ||
| - | $ scl enable devtoolset-2 bash | + | $ sudo mkdir /export/apps/changeo/0.3.5 |
| - | $ sudo mkdir -p /export/apps/changeo/0.3.3/ | + | $ sudo chown aorth /export/apps/changeo/0.3.5 |
| - | $ sudo chown -R joguya:joguya /export/apps/changeo/0.3.3/ | + | $ python -m venv /export/apps/changeo/0.3.5 |
| - | $ python setup.py build | + | $ . /export/apps/changeo/0.3.5/bin/activate |
| - | $ python setup.py install --install-scripts=/export/apps/changeo/0.3.3/bin | + | $ pip install -U pip setuptools |
| - | $ sudo chown -R root:root /export/apps/changeo/0.3.3/ /export/apps/python/3.4.3/ | + | $ pip install -U numpy scipy pandas biopython |
| - | </code> | + | $ pip install -U changeo |
| + | $ sudo chown -R root:root /export/apps/changeo/0.3.5</code> | ||
| + | |||
| + | Change-O requires presto, so either install it and all of its dependencies here as well, or just make sure the Change-O module also loads presto. | ||
changeo-software.txt · Last modified: 2017/11/06 19:35 by aorth
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