Change-O is a collection of tools for processing the output of V(D)J alignment tools, assigning clonal clusters to immunoglobulin sequences, and reconstructing germline sequences.
See which versions of changeo are available:
$ module avail changeo
Load changeo into your environment:
$ module load changeo/0.3.9
Notes from the sysadmin during installation:
$ cd /tmp $ module load python/3.4.7 $ scl enable devtoolset-4 bash $ sudo mkdir /export/apps/changeo/0.3.9 $ sudo chown aorth /export/apps/changeo/0.3.9 $ python -m venv /export/apps/changeo/0.3.9 $ . /export/apps/changeo/0.3.9/bin/activate $ pip3 install -U pip setuptools $ pip3 install -U numpy scipy pandas biopython $ pip3 install -U changeo $ sudo chown -R root:root /export/apps/changeo/0.3.9