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chado [2010/01/14 12:17]
172.26.15.184
chado [2010/05/22 17:19] (current)
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 Convert file to gff using script: Convert file to gff using script:
-<​code>​genbank2gff3.pl</​code>​+<​code> ​bp_genbank2gff3.pl NC_001142.gbk</​code>​
  
 Create pgsql database. Create pgsql database.
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 Load gff3 data into database Load gff3 data into database
-<​code>​gmod_bulk_load_gff3.pl ​ --dbname tparvadb --dbxref GeneID --organism T.parva --gff T.parva_chr1.gb.gff</​code>​+<​code>​gmod_bulk_load_gff3.pl ​ --dbname tparvadb --dbxref GeneID --organism T.parva --gff T.parva_chr1.gbk.gff</​code>​
  
 Install Gbrowse2 Install Gbrowse2
chado.txt · Last modified: 2010/05/22 17:19 (external edit)