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chado
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| Both sides previous revision Previous revision Next revision | Previous revision | ||
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chado [2010/01/14 12:17] 172.26.15.184 |
chado [2010/05/22 17:19] (current) |
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| Convert file to gff using script: | Convert file to gff using script: | ||
| - | <code>genbank2gff3.pl</code> | + | <code> bp_genbank2gff3.pl NC_001142.gbk</code> |
| Create pgsql database. | Create pgsql database. | ||
| Line 17: | Line 17: | ||
| Load gff3 data into database | Load gff3 data into database | ||
| - | <code>gmod_bulk_load_gff3.pl --dbname tparvadb --dbxref GeneID --organism T.parva --gff T.parva_chr1.gb.gff</code> | + | <code>gmod_bulk_load_gff3.pl --dbname tparvadb --dbxref GeneID --organism T.parva --gff T.parva_chr1.gbk.gff</code> |
| Install Gbrowse2 | Install Gbrowse2 | ||
chado.txt · Last modified: 2010/05/22 17:19 (external edit)
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