Differences

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--- chado [2010/01/14 08:07]
172.26.15.184
+++ chado [2010/05/22 14:19]
@@ Line 1: / Line 1: @@
-====== Chado ======
-Create new T.pava Chr1 Chado database from Chr1 Genbank file. Local version of Genbank file does not work. Downloaded new file from Genbank: NC_001142.gbk
-Convert file to gff using script:
-Create pgsql database and load data:
-''createdb --template=chado tparvadb''
-''psql tparvadb''
- ''chado> SELECT * FROM organism;''
- ''chado> INSERT INTO organism ( abbreviation, genus, species, common_name) VALUES ('T.testus','Test','testus','test');''
- ''chado> \q''
-''gmod_bulk_load_gff3.pl  --dbname tparvadb --dbxref GeneID --organism T.parva --gff T.parva_chr1.gb.gff''

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