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cegma-software

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CEGMA

CEGMA (Core Eukaryotic Genes Mapping Approach) is a software package for building a highly reliable set of gene annotations in the absence of experimental data.

Information

Usage

See versions of cegma which are available

$ module avail cegma

Test with sample data

$ module load cegma/v2.5
$ cegma -g $CEGMA/sample/sample.dna -p $CEGMA/sample/sample.prot

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ git clone https://github.com/KorfLab/CEGMA_v2.git
$ cd CEGMA_v2
$ git checkout v2.5
$ make
$ sudo mkdir -p /export/apps/cegma/v2.5
$ sudo cp -rv * /export/apps/cegma/v2.5
cegma-software.txt · Last modified: 2015/07/29 10:41 by aorth