A program for clustering and comparing protein or nucleotide sequences.

• Version: 4.6.8
• Added: August, 2016
• Updated: November, 2018
• Link: http://weizhongli-lab.org/cd-hit/

See which versions of cd-hit are available:

$ module avail cd-hit

Load one version into your environment and run it:

$ module load cd-hit/4.6.8

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/weizhongli/cdhit/archive/V4.6.8.tar.gz
$ cd cdhit-4.6.8
$ make
$ sudo mkdir -p /export/apps/cd-hit/4.6.8
$ sudo chown aorth /export/apps/cd-hit/4.6.8
$ PREFIX=/export/apps/cd-hit/4.6.8 make install
$ sudo chown root /export/apps/cd-hit/4.6.8/*