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A program for clustering and comparing protein or nucleotide sequences.
See which versions of cd-hit are available:
$ module avail cd-hit
Load one version into your environment and run it:
$ module load cd-hit/4.6.8
Notes from the sysadmin during installation:
$ cd /tmp $ wget https://github.com/weizhongli/cdhit/archive/V4.6.8.tar.gz $ cd cdhit-4.6.8 $ make $ sudo mkdir -p /export/apps/cd-hit/4.6.8 $ sudo chown aorth /export/apps/cd-hit/4.6.8 $ PREFIX=/export/apps/cd-hit/4.6.8 make install $ sudo chown root /export/apps/cd-hit/4.6.8/*/