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cd-hit-software
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cd-hit-software [2016/08/30 07:13] joguya created |
cd-hit-software [2018/11/16 14:46] (current) aorth |
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| ====== CD-HIT ====== | ====== CD-HIT ====== | ||
| - | |||
| A program for clustering and comparing protein or nucleotide sequences. | A program for clustering and comparing protein or nucleotide sequences. | ||
| ===== Information ===== | ===== Information ===== | ||
| - | * Version: 4.6.6 | + | * Version: 4.6.8 |
| * Added: August, 2016 | * Added: August, 2016 | ||
| + | * Updated: November, 2018 | ||
| * Link: http:// | * Link: http:// | ||
| Line 14: | Line 14: | ||
| < | < | ||
| - | Load cd-hit | + | Load one version into your environment and run it: |
| - | < | + | < |
| ===== Installation ====== | ===== Installation ====== | ||
| Line 21: | Line 21: | ||
| Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
| - | < | + | < |
| - | $ cd /tmp | + | $ wget https:// |
| - | $ wget -qO - https:// | + | $ cd cdhit-4.6.8 |
| - | $ cd cdhit-4.6.6/ | + | |
| - | $ scl enable devtoolset-2 bash | + | |
| - | $ module load openmpi/1.8.2 | + | |
| - | $ sudo mkdir -p / | + | |
| - | $ sudo chown joguya: | + | |
| $ make | $ make | ||
| - | $ sed -i 's|#!/usr/bin/perl|#!/usr/bin/env perl|g' | + | $ sudo mkdir -p /export/apps/cd-hit/4.6.8 |
| - | $ find . -type f -perm /o+x -exec cp -v {} / | + | $ sudo chown aorth / |
| - | $ cd cd-hit-auxtools | + | $ PREFIX=/ |
| - | $ make | + | $ sudo chown root / |
| - | $ sed -i ' | + | |
| - | $ find . -type f -perm /o+x -exec cp -v {} / | + | |
| - | $ sudo chown -R root:root / | + | |
cd-hit-software.1472541182.txt.gz · Last modified: 2016/08/30 07:13 by joguya
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