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cd-hit-software [2016/08/30 07:13]
joguya created
cd-hit-software [2018/11/16 14:46] (current)
aorth
Line 1: Line 1:
 ====== CD-HIT ====== ====== CD-HIT ======
- 
 A program for clustering and comparing protein or nucleotide sequences. A program for clustering and comparing protein or nucleotide sequences.
  
 ===== Information ===== ===== Information =====
  
-  * Version: 4.6.6+  * Version: 4.6.8
   * Added: August, 2016   * Added: August, 2016
 +  * Updated: November, 2018
   * Link: http://weizhongli-lab.org/cd-hit/   * Link: http://weizhongli-lab.org/cd-hit/
  
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 <code>$ module avail cd-hit</code> <code>$ module avail cd-hit</code>
  
-Load cd-hit +Load one version into your environment and run it: 
-<code>$ module load cd-hit/4.6.6</code>+<code>$ module load cd-hit/4.6.8</code>
  
 ===== Installation ====== ===== Installation ======
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 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code> +<code>$ cd /tmp 
-$ cd /tmp +$ wget https://github.com/weizhongli/cdhit/archive/V4.6.8.tar.gz 
-$ wget -qO - https://github.com/weizhongli/cdhit/archive/V4.6.6.tar.gz | tar -xzv +$ cd cdhit-4.6.8
-$ cd cdhit-4.6.6/ +
-$ scl enable devtoolset-2 bash +
-$ module load openmpi/1.8.2 +
-$ sudo mkdir -p /export/apps/cd-hit/4.6.6/ +
-$ sudo chown joguya:joguya /export/apps/cd-hit/4.6.6/+
 $ make $ make
-sed -i 's|#!/usr/bin/perl|#!/usr/bin/env perl|g' *.pl +sudo mkdir -/export/apps/cd-hit/4.6.8 
-find . -type f -perm /o+x -exec cp -v {} /export/apps/cd-hit/4.6.6/ \; +sudo chown aorth /export/apps/cd-hit/4.6.8 
-cd cd-hit-auxtools +PREFIX=/export/apps/cd-hit/4.6.8 make install 
-$ make +$ sudo chown root /export/apps/cd-hit/4.6.8/*</code>
-$ sed -i 's|#!/usr/bin/perl|#!/usr/bin/env perl|g' *.pl +
-$ find . -type f -perm /o+x -exec cp -v {} /export/apps/cd-hit/4.6.6/ \; +
-$ sudo chown -R root:root /export/apps/cd-hit/4.6.6/</code> +
cd-hit-software.1472541182.txt.gz · Last modified: 2016/08/30 07:13 by joguya