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cd-hit-software

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CD-HIT

A program for clustering and comparing protein or nucleotide sequences.

Information

Usage

See which versions of cd-hit are available:

$ module avail cd-hit

Load one version into your environment and run it:

$ module load cd-hit/4.6.8

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/weizhongli/cdhit/archive/V4.6.8.tar.gz
$ cd cdhit-4.6.8
$ make
$ sudo mkdir -p /export/apps/cd-hit/4.6.8
$ sudo chown aorth /export/apps/cd-hit/4.6.8
$ PREFIX=/export/apps/cd-hit/4.6.8 make install
$ sudo chown root /export/apps/cd-hit/4.6.8/*
cd-hit-software.txt · Last modified: 2018/11/16 17:46 by aorth