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canu-software

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Table of Contents

Canu

Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION).

Information

Usage

See which versions of canu are available:

$ module avail canu

Load one version into your environment and run it:

$ module load canu/1.8
$ canu

Note: canu will use all the CPUs available on the machine and you should limit it with maxThreads (see docs)

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/marbl/canu/releases/download/v1.8/canu-1.8.Linux-amd64.tar.xz
$ tar xf canu-1.8.Linux-amd64.tar.xz
$ sudo mkdir -p /export/apps/canu/1.8
$ sudo cp -r canu-1.8/* /export/apps/canu/1.8
canu-software.1550137886.txt.gz · Last modified: 2019/02/14 12:51 by aorth