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canu-software [2017/09/25 17:09]
aorth created
canu-software [2019/02/14 12:52]
aorth [Usage]
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 ====== Canu ====== ====== Canu ======
 +Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION).
  
 ===== Information ===== ===== Information =====
  
-  * Version: 1.6+  * Version: 1.8
   * Added: September, 2017   * Added: September, 2017
 +  * Updated: October, 2018
   * Link: http://​canu.readthedocs.io/​   * Link: http://​canu.readthedocs.io/​
  
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 <​code>​$ module avail canu</​code>​ <​code>​$ module avail canu</​code>​
  
-Load canu into your environment and run it: +Load one version ​into your environment and run it: 
-<​code>​$ module load canu/1.6+<​code>​$ module load canu/1.8
 $ canu</​code>​ $ canu</​code>​
 +
 +Note: By default canu will try to use all the CPUs available on the machine so you should limit it to the number of CPUs requested in your SLURM jobs with the ''​maxThreads''​ option. See the [[https://​canu.readthedocs.io/​en/​latest/​parameter-reference.html#​grid-options|documentation]].
  
 ===== Installation ====== ===== Installation ======
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 <​code>​$ cd /tmp <​code>​$ cd /tmp
-$ wget https://​github.com/​marbl/​canu/​releases/​download/​v1.6/canu-1.6.Linux-amd64.tar.xz +$ wget https://​github.com/​marbl/​canu/​releases/​download/​v1.8/canu-1.8.Linux-amd64.tar.xz 
-$ tar xf canu-1.6.Linux-amd64.tar.xz +$ tar xf canu-1.8.Linux-amd64.tar.xz 
-$ sudo mkdir -p /​export/​apps/​canu/​1.6 +$ sudo mkdir -p /​export/​apps/​canu/​1.8 
-$ sudo cp -r canu-1.6/Linux-amd64/​bin ​/​export/​apps/​canu/​1.6</​code>​+$ sudo cp -r canu-1.8//​export/​apps/​canu/​1.8</​code>​
canu-software.txt · Last modified: 2019/02/14 12:52 by aorth