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canu-software [2017/09/25 17:09]
aorth created
canu-software [2019/02/14 12:52]
aorth
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 ====== Canu ====== ====== Canu ======
 +Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION).
  
 ===== Information ===== ===== Information =====
  
-  * Version: 1.6+  * Version: 1.8
   * Added: September, 2017   * Added: September, 2017
 +  * Updated: October, 2018
   * Link: http://​canu.readthedocs.io/​   * Link: http://​canu.readthedocs.io/​
  
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 <​code>​$ module avail canu</​code>​ <​code>​$ module avail canu</​code>​
  
-Load canu into your environment and run it: +Load one version ​into your environment and run it: 
-<​code>​$ module load canu/1.6+<​code>​$ module load canu/1.8
 $ canu</​code>​ $ canu</​code>​
 +
 +Note: By default canu will try to use all the CPUs available on the machine so you should limit it with the ''​maxThreads''​ option. See the [[https://​canu.readthedocs.io/​en/​latest/​parameter-reference.html#​grid-options|documentation]].
  
 ===== Installation ====== ===== Installation ======
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 <​code>​$ cd /tmp <​code>​$ cd /tmp
-$ wget https://​github.com/​marbl/​canu/​releases/​download/​v1.6/canu-1.6.Linux-amd64.tar.xz +$ wget https://​github.com/​marbl/​canu/​releases/​download/​v1.8/canu-1.8.Linux-amd64.tar.xz 
-$ tar xf canu-1.6.Linux-amd64.tar.xz +$ tar xf canu-1.8.Linux-amd64.tar.xz 
-$ sudo mkdir -p /​export/​apps/​canu/​1.6 +$ sudo mkdir -p /​export/​apps/​canu/​1.8 
-$ sudo cp -r canu-1.6/Linux-amd64/​bin ​/​export/​apps/​canu/​1.6</​code>​+$ sudo cp -r canu-1.8//​export/​apps/​canu/​1.8</​code>​
canu-software.txt · Last modified: 2019/02/14 12:52 by aorth