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canu-software [2017/09/25 14:09]
aorth created
canu-software [2019/02/14 09:51]
aorth
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 ====== Canu ====== ====== Canu ======
 +Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION).
  
 ===== Information ===== ===== Information =====
  
-  * Version: 1.6+  * Version: 1.8
   * Added: September, 2017   * Added: September, 2017
 +  * Updated: October, 2018
   * Link: http://canu.readthedocs.io/   * Link: http://canu.readthedocs.io/
  
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 <code>$ module avail canu</code> <code>$ module avail canu</code>
  
-Load canu into your environment and run it: +Load one version into your environment and run it: 
-<code>$ module load canu/1.6+<code>$ module load canu/1.8
 $ canu</code> $ canu</code>
 +
 +Note: canu will use all the CPUs available on the machine and you should limit it with ''maxThreads'' ([[https://canu.readthedocs.io/en/latest/parameter-reference.html#grid-options|see docs]])
  
 ===== Installation ====== ===== Installation ======
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 <code>$ cd /tmp <code>$ cd /tmp
-$ wget https://github.com/marbl/canu/releases/download/v1.6/canu-1.6.Linux-amd64.tar.xz +$ wget https://github.com/marbl/canu/releases/download/v1.8/canu-1.8.Linux-amd64.tar.xz 
-$ tar xf canu-1.6.Linux-amd64.tar.xz +$ tar xf canu-1.8.Linux-amd64.tar.xz 
-$ sudo mkdir -p /export/apps/canu/1.6 +$ sudo mkdir -p /export/apps/canu/1.8 
-$ sudo cp -r canu-1.6/Linux-amd64/bin /export/apps/canu/1.6</code>+$ sudo cp -r canu-1.8//export/apps/canu/1.8</code>
canu-software.txt · Last modified: 2019/02/14 09:52 by aorth