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cafe-software [2018/06/12 18:09] (current)
aorth created
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 +====== cafe ======
 +The purpose of CAFE is to analyze changes in gene family size in a way that accounts for phylogenetic history and provides a statistical foundation for evolutionary inferences.
  
 +===== Information =====
 +
 +  * Version: 4.1
 +  * Added: June, 2018
 +  * Link: https://​hahnlab.github.io/​CAFE/​index.html
 +
 +===== Usage =====
 +
 +See versions of cafe which are available:
 +<​code>​$ module avail cafe</​code>​
 +
 +Load the latest version into your environment and print help:
 +<​code>​$ module load cafe/4.1
 +$ cafe</​code>​
 +
 +===== Installation ======
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ cd /tmp
 +$ wget https://​github.com/​hahnlab/​CAFE/​releases/​download/​v4.1/​CAFE-4.1.tar.gz
 +$ tar xf CAFE-4.1.tar.gz
 +$ cd CAFE
 +$ ./configure --prefix=/​export/​apps/​cafe/​4.1
 +$ make USE_READLINE=1
 +$ sudo mkdir -p /​export/​apps/​cafe/​4.1/​bin
 +$ sudo cp release/​cafe /​export/​apps/​cafe/​4.1/​bin
 +$ sudo cp -r docs example LICENSE README.md /​export/​apps/​cafe/​4.1</​code>​
cafe-software.txt · Last modified: 2018/06/12 18:09 by aorth