The purpose of CAFE is to analyze changes in gene family size in a way that accounts for phylogenetic history and provides a statistical foundation for evolutionary inferences.
See versions of cafe which are available:
$ module avail cafe
Load the latest version into your environment and print help:
$ module load cafe/4.1 $ cafe
Notes from the sysadmin during installation:
$ cd /tmp $ wget https://github.com/hahnlab/CAFE/releases/download/v4.1/CAFE-4.1.tar.gz $ tar xf CAFE-4.1.tar.gz $ cd CAFE $ ./configure --prefix=/export/apps/cafe/4.1 $ make USE_READLINE=1 $ sudo mkdir -p /export/apps/cafe/4.1/bin $ sudo cp release/cafe /export/apps/cafe/4.1/bin $ sudo cp -r docs example LICENSE README.md /export/apps/cafe/4.1