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cafe-software

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cafe

The purpose of CAFE is to analyze changes in gene family size in a way that accounts for phylogenetic history and provides a statistical foundation for evolutionary inferences.

Information

Usage

See versions of cafe which are available:

$ module avail cafe

Load the latest version into your environment and print help:

$ module load cafe/4.1
$ cafe

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/hahnlab/CAFE/releases/download/v4.1/CAFE-4.1.tar.gz
$ tar xf CAFE-4.1.tar.gz
$ cd CAFE
$ ./configure --prefix=/export/apps/cafe/4.1
$ make USE_READLINE=1
$ sudo mkdir -p /export/apps/cafe/4.1/bin
$ sudo cp release/cafe /export/apps/cafe/4.1/bin
$ sudo cp -r docs example LICENSE README.md /export/apps/cafe/4.1
cafe-software.txt · Last modified: 2018/06/12 18:09 by aorth