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--- bwa-software [2015/03/13 08:00]
aorth created
+++ bwa-software [2020/06/17 07:04]
aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Version: 0.7.12
+  * Latest version: 0.7.17
   * Added: April, 2013
-  * Updated: March, 2015
+  * Updated: June, 2020
-  * Link: http://bio-bwa.sourceforge.net
+  * Link: https://github.com/lh3/bwa
 ===== Usage =====
-=== See versions of bwa which are available ===
+See versions of bwa which are available:
-<code>module avail bwa</code>
+<code>$ module avail bwa</code>
+Load one version into your environment and run it:
+<code>$ module load bwa/0.7.17</code>
 ===== Installation ======
 Notes from the sysadmin during installation:
-<code>$ cd /tmp
+<code>
-$ wget 'http://downloads.sourceforge.net/project/bio-bwa/bwa-0.7.12.tar.bz2?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fbio-bwa%2Ffiles%2F&ts=1426229921&use_mirror=liquidtelecom' -O bwa-0.7.12.tar.bz2
+$ cd /tmp
-$ tar xf bwa-0.7.12.tar.bz2
+$ wget https://github.com/lh3/bwa/releases/download/v0.7.17/bwa-0.7.17.tar.bz2
-$ cd bwa-0.7.12
+$ tar xf bwa-0.7.17.tar.bz2
-$ sed -i 's/gcc$/clang/' Makefile
+$ cd bwa-0.7.17
 $ make
-$ sudo mkdir -p /export/apps/bwa/0.7.12/{bin,share/man/man1}
+$ sudo mkdir -p /export/apps/bwa/0.7.17/{bin,share/man/man1}
-$ sudo cp bwa *.pl /export/apps/bwa/0.7.12/bin
+$ sudo cp bwa *.pl /export/apps/bwa/0.7.17/bin
-$ sudo cp bwa.1 /export/apps/bwa/0.7.12/share/man/man1</code>
+$ sudo cp -rv bwakit/ /export/apps/bwa/0.7.17
+</code>

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