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bwa-software

Burrows-Wheeler Aligner

BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome.

Information

Usage

See versions of bwa which are available

module avail bwa

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget -qO- "https://downloads.sourceforge.net/project/bio-bwa/bwa-0.7.15.tar.bz2?r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Fbio-bwa%2Ffiles%2F&ts=1486290428&use_mirror=netix" | tar xjv
$ cd bwa-0.7.15/
$ scl enable devtoolset-2 bash
$ make
$ sudo mkdir -p /export/apps/bwa/0.7.15/{bin,share/man/man1}
$ sudo cp bwa *.pl /export/apps/bwa/0.7.15/bin
$ sudo cp -rv bwakit/ /export/apps/bwa/0.7.15/
bwa-software.txt · Last modified: 2017/05/03 12:49 by aorth