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busco-software

BUSCO

BUSCO (Benchmarking Universal Single-Copy Orthologs) assesses genome assembly and annotation completeness with single-copy ortholog.

Information

Usage

See versions of BUSCO which are available:

$ module avail BUSCO

Installation

Notes from the sysadmin during installation:

$ wget http://busco.ezlab.org/files/BUSCO_v1.1b1.tar.gz
$ tar -xvf BUSCO_v1.1b1.tar.gz
$ cd BUSCO_v1.1b1
$ ln -s BUSCO_v1.1b1.py BUSCO_v1.1b.py
$ chmod +x BUSCO_v1.1b1.py
$ sudo mkdir -p /export/apps/BUSCO/v1.1b/
$ sudo cp -r . /export/apps/BUSCO/v1.1b/

Running

After loading the module, consult the built-in help:

$ BUSCO_v1.1b.py --help
busco-software.txt · Last modified: 2017/01/11 16:56 by joguya