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brig-software [2015/09/16 12:32] (current)
joguya created
Line 1: Line 1:
 +====== BRIG ======
 +BLAST Ring Image Generator(BRIG) displays circular comparisons between a large number of genomes, with a focus on handling genome assembly data.
  
 +===== Information =====
 +
 +  * Version: 0.95
 +  * Added: September, 2015
 +  * Link: http://​sourceforge.net/​projects/​brig/​
 +
 +===== Usage =====
 +
 +See versions of BRIG which are available:
 +<​code>​$ module avail brig</​code>​
 +
 +Load and run BRIG:
 +<​code>​$ module load brig/0.95
 +$ brig</​code>​
 +
 +===== Installation ======
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ cd /tmp
 +$ scl enable devtoolset-2 bash
 +$ wget "​http://​downloads.sourceforge.net/​project/​brig/​BRIG-0.95-dist.zip?​r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fbrig%2F&​ts=1442392406&​use_mirror=liquidtelecom"​ -O BRIG-0.95-dist.zip
 +$ unzip BRIG-0.95-dist.zip
 +$ cd BRIG-0.95-dist
 +$ sudo mkdir -p /​export/​apps/​brig/​0.95/​
 +$ sudo cp -rv . /​export/​apps/​brig/​0.95/​
 +</​code>​
 +
 +I created a wrapper shell script named ''​brig''​ to run BRIG instead of running ''​java -jar BRIG.jar''​ command which is a bit unfriendly.
 +<​code>​
 +#​!/​usr/​bin/​env bash
 +
 +readonly PREFIX=$(dirname $0)
 +
 +java -jar $PREFIX/​BRIG.jar $*
 +</​code>​
brig-software.txt · Last modified: 2015/09/16 12:32 by joguya