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--- bowtie2-software [2015/03/24 08:15]
joguya [Usage]
+++ bowtie2-software [2018/03/27 10:53] (current)
aorth
@@ Line 8: / Line 8: @@
 ===== Information =====
-  * Version: 2.2.3
+  * Version: 2.3.4.1
-  * Added: October, 2014
+  * Added: March, 2015
+  * Updated: March, 2018
   * Link: http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
 ===== Usage =====
-=== See versions of bowtie2 which are available ===
+See versions of bowtie2 which are available:
 <code>$ module avail bowtie2</code>
-=== Load and run bowtie2 ===
+Load one version of bowtie2 into your environment and run it:
-<code>$ module load bowtie2/2.2.5
+<code>$ module load bowtie2/2.3.4.1
 $ bowtie2</code>
 ===== Installation ======
 Notes from the sysadmin during installation:
-<code>$ wget "http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.5/bowtie2-2.2.5-linux-x86_64.zip?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fbowtie-bio%2Ffiles%2Fbowtie2%2F2.2.5%2F&ts=1427184187&use_mirror=liquidtelecom" -O bowtie2-2.2.5-linux-x86_64.zip
+<code>$ cd /tmp
-$ unzip bowtie2-2.2.5-linux-x86_64.zip
+$ wget https://tenet.dl.sourceforge.net/project/bowtie-bio/bowtie2/2.3.4.1/bowtie2-2.3.4.1-linux-x86_64.zip
-$ sudo mkdir /export/apps/bowtie2/2.2.5/
+$ unzip bowtie2-2.3.4.1-linux-x86_64.zip
-$ sudo cp -rv bowtie2-2.2.5/* /export/apps/bowtie2/2.2.5/</code>
+$ sudo mkdir /export/apps/bowtie2/2.3.4.1
+$ sudo cp -r bowtie2-2.3.4.1-linux-x86_64/* /export/apps/bowtie2/2.3.4.1</code>

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