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bitseq-software [2016/03/24 16:33] (current)
joguya created
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 +====== BitSeq ======
  
 +Transcript isoform level expression and differential expression estimation for RNA-seq.
 +
 +===== Information =====
 +
 +  * Version: 0.7.5
 +  * Added: March, 2016
 +  * Link: https://​bitseq.github.io/​
 +
 +===== Usage =====
 +
 +See which versions of bitseq are available:
 +<​code>​$ module avail bitseq
 +</​code>​
 +
 +Load bitseq
 +<​code>​$ module load bitseq/​0.7.5</​code>​
 +
 +===== Installation ======
 +
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ cd /tmp
 +$ wget https://​github.com/​BitSeq/​BitSeq/​archive/​v0.7.5.tar.gz
 +$ tar -xvf v0.7.5.tar.gz
 +$ cd BitSeq-0.7.5/​
 +$ scl enable devtoolset-2 bash
 +$ module load samtools/​1.2
 +$ sudo mkdir -p /​export/​apps/​bitseq/​0.7.5
 +$ sudo cp -r bin/* biocUpdate.sh checkTR.py extractTranscriptInfo.py parseAlignment.py releaseDo.sh /​export/​apps/​bitseq/​0.7.5/​
 +</​code>​
bitseq-software.txt · Last modified: 2016/03/24 16:33 by joguya