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+ | ====== BitSeq ====== | ||
+ | Transcript isoform level expression and differential expression estimation for RNA-seq. | ||
+ | |||
+ | ===== Information ===== | ||
+ | |||
+ | * Version: 0.7.5 | ||
+ | * Added: March, 2016 | ||
+ | * Link: https://bitseq.github.io/ | ||
+ | |||
+ | ===== Usage ===== | ||
+ | |||
+ | See which versions of bitseq are available: | ||
+ | <code>$ module avail bitseq | ||
+ | </code> | ||
+ | |||
+ | Load bitseq | ||
+ | <code>$ module load bitseq/0.7.5</code> | ||
+ | |||
+ | ===== Installation ====== | ||
+ | |||
+ | Notes from the sysadmin during installation: | ||
+ | |||
+ | <code>$ cd /tmp | ||
+ | $ wget https://github.com/BitSeq/BitSeq/archive/v0.7.5.tar.gz | ||
+ | $ tar -xvf v0.7.5.tar.gz | ||
+ | $ cd BitSeq-0.7.5/ | ||
+ | $ scl enable devtoolset-2 bash | ||
+ | $ module load samtools/1.2 | ||
+ | $ sudo mkdir -p /export/apps/bitseq/0.7.5 | ||
+ | $ sudo cp -r bin/* biocUpdate.sh checkTR.py extractTranscriptInfo.py parseAlignment.py releaseDo.sh /export/apps/bitseq/0.7.5/ | ||
+ | </code> |