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Some of the most common biological sequence databases are available on the HPC for you to use with tools like BLAST. Below you can find the list of them, their location on the system, and the last time they were updated.
We endeavor to keep this list updated as the One True List™.
|Name||Version number||Last updated¹||Where it resides||How to use|
|NCBI nr/nt nucleotide collection||N/A||2018-11-24||use
|NCBI nr/nt protein collection||N/A||2018-08-16||use
|UniProt's UniProtKB/Swiss-Prot (manually curated, most reliable)||N/A||?||use
|UniProt's UniProtKB/TrEMBL (automated curation)||N/A||?||use
¹ Use the following to determine the date of a BLAST database:
/export/apps/blast/2.7.1+/bin/blastdbcmd -info -db nt | grep Date