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biological-databases [2020/04/08 09:38]
aorth
biological-databases [2020/04/08 09:56]
aorth
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 </code> </code>
  
 +
 +----
  
 ==== Notes ===== ==== Notes =====
-  * 1. Use the following to determine the date of a BLAST database:+1. Use the following to determine the date of a BLAST database:
  
 <code>$ module load blast/2.10.0+ <code>$ module load blast/2.10.0+
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 </code> </code>
  
-  * 2: NCBI introduced database format version 5 in 2019 and these only work with BLAST tools starting from 2.9.0. They are no longer updating the version 4 databses, but we have preserved them in a separate directory if you are using tools that do not support version 5+2. In 2019 [[https://ncbiinsights.ncbi.nlm.nih.gov/2019/05/24/have-you-tried-blast-2-9-0-and-version-5-blast-databases-dbv5/|NCBI introduced BLAST database format version 5]] and these only work with BLAST tools starting from 2.9.0. NCBI are no longer updating the version 4 databases, but we have preserved them in a separate directory if you are using tools that do not support version 5:
  
 +''/export/data/bio/ncbi/blast/db/v4''
biological-databases.txt · Last modified: 2020/04/08 11:14 by aorth