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binpacker-software

BinPacker

BinPacker - Serial Graph Partitioning and Fill-reducing Matrix Ordering.

Information

Usage

See which versions of BinPacker are available:

$ module avail binpacker

Load BinPacker

$ module load binpacker/1.0

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget "http://downloads.sourceforge.net/project/transcriptomeassembly/BinPacker_binary.tar.gz?r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Ftranscriptomeassembly%2Ffiles%2F%3Fsource%3Dnavbar&ts=1484138558&use_mirror=liquidtelecom" -qO - | tar xzv
$ cd BinPacker_binary
$ sudo mkdir /export/apps/binpacker/1.0/
$ sudo chown -R joguya:joguya /export/apps/binpacker/1.0/
$ scl enable devtoolset-3 bash
$ ./configure --prefix=/export/apps/binpacker/1.0/ --enable-static-boost --with-boost=/export/apps/boost/1.50.0
$ make -j4
$ make install
$ make installcheck
$ mkdir -p /export/apps/binpacker/1.0/{plugins/fasttool,src}
$ find src/ -type f -perm /u+x -exec cp -v {} /export/apps/binpacker/1.0/src/ \;
$ find plugins/fastool/ -type f -perm /u+x -exec cp -v {} /export/apps/binpacker/1.0/plugins/fastool/ \;
$ sudo chown -R root:root /export/apps/binpacker/1.0/
binpacker-software.txt · Last modified: 2017/02/13 10:43 by joguya