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bedtools-software [2016/06/22 09:41]
joguya [Information]
bedtools-software [2019/09/29 21:21] (current)
aorth
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 ===== Information ===== ===== Information =====
  
-  * Version: 2.25.0+  * Version: 2.29.0
   * Added: January, 2013   * Added: January, 2013
-  * Updated: ​June2016+  * Updated: ​September2019
   * Link: https://​bedtools.readthedocs.io/​en/​latest/​   * Link: https://​bedtools.readthedocs.io/​en/​latest/​
  
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 <​code>​$ module avail bedtools</​code>​ <​code>​$ module avail bedtools</​code>​
  
-Load bedtools +Load one version into your environment and run it: 
-<​code>​$ module load bedtools/2.25.0</​code>​+<​code>​$ module load bedtools/2.29.0 
 +$ bedtools</​code>​
  
 ===== Installation ====== ===== Installation ======
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 Notes from the sysadmin during installation:​ Notes from the sysadmin during installation:​
  
-<​code>​ +<​code>​$ cd /tmp 
-$ cd /tmp/ +$ wget https://​github.com/​arq5x/​bedtools2/​releases/​download/​v2.29.0/​bedtools-2.29.0.tar.gz 
-$ wget https://​github.com/​arq5x/​bedtools2/​releases/​download/​v2.25.0/​bedtools-2.25.0.tar.gz +cd bedtools2 
-tar -xvf bedtools-2.25.0.tar.gz +$ scl enable devtoolset-bash
-$ scl enable devtoolset-bash +
-$ sudo mkdir /​export/​apps/​bedtools/​2.25.0/​ +
-$ sudo chown -R joguya:​joguya /​export/​apps/​bedtools/​2.25.0/​ +
-$ sed -i '​s#​prefix = /​usr/​local#​prefix = /​export/​apps/​bedtools/​2.25.0#'​ Makefile+
 $ make $ make
-$ make install +$ sudo mkdir -p /​export/​apps/​bedtools/​2.29.0 
-$ sudo chown -R root:root /​export/​apps/​bedtools/​2.25.0+$ sudo chown aorth /​export/​apps/​bedtools/​2.29.0 
-</​code>​+$ sudo mkdir -p /​export/​apps/​bedtools/​2.29.0 
 +$ make install ​prefix=/​export/​apps/​bedtools/​2.29.0 
 +$ sudo chown -R root:root /​export/​apps/​bedtools/​2.29.0</​code>​
bedtools-software.txt · Last modified: 2019/09/29 21:21 by aorth