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bedtools-software [2016/06/22 06:41]
joguya [Information]
bedtools-software [2019/09/29 18:21]
aorth
Line 5: Line 5:
 ===== Information ===== ===== Information =====
  
-  * Version: 2.25.0+  * Version: 2.29.0
   * Added: January, 2013   * Added: January, 2013
-  * Updated: June2016+  * Updated: September2019
   * Link: https://bedtools.readthedocs.io/en/latest/   * Link: https://bedtools.readthedocs.io/en/latest/
  
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 <code>$ module avail bedtools</code> <code>$ module avail bedtools</code>
  
-Load bedtools +Load one version into your environment and run it: 
-<code>$ module load bedtools/2.25.0</code>+<code>$ module load bedtools/2.29.0 
 +$ bedtools</code>
  
 ===== Installation ====== ===== Installation ======
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 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code> +<code>$ cd /tmp 
-$ cd /tmp/ +$ wget https://github.com/arq5x/bedtools2/releases/download/v2.29.0/bedtools-2.29.0.tar.gz 
-$ wget https://github.com/arq5x/bedtools2/releases/download/v2.25.0/bedtools-2.25.0.tar.gz +cd bedtools2 
-tar -xvf bedtools-2.25.0.tar.gz +$ scl enable devtoolset-bash
-$ scl enable devtoolset-bash +
-$ sudo mkdir /export/apps/bedtools/2.25.0/ +
-$ sudo chown -R joguya:joguya /export/apps/bedtools/2.25.0/ +
-$ sed -i 's#prefix = /usr/local#prefix = /export/apps/bedtools/2.25.0#' Makefile+
 $ make $ make
-$ make install +$ sudo mkdir -p /export/apps/bedtools/2.29.0 
-$ sudo chown -R root:root /export/apps/bedtools/2.25.0+$ sudo chown aorth /export/apps/bedtools/2.29.0 
-</code>+$ sudo mkdir -p /export/apps/bedtools/2.29.0 
 +$ make install prefix=/export/apps/bedtools/2.29.0 
 +$ sudo chown -R root:root /export/apps/bedtools/2.29.0</code>
bedtools-software.txt · Last modified: 2020/08/23 06:47 by aorth