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bedtools-software

bedtools

Bedtools is a fast, flexible toolset for genome arithmetic.

Information

Usage

See which versions of bedtools are available:

$ module avail bedtools

Load one version into your environment and run it:

$ module load bedtools/2.29.0
$ bedtools

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/arq5x/bedtools2/releases/download/v2.29.0/bedtools-2.29.0.tar.gz
$ cd bedtools2
$ scl enable devtoolset-7 bash
$ make
$ sudo mkdir -p /export/apps/bedtools/2.29.0
$ sudo chown aorth /export/apps/bedtools/2.29.0
$ sudo mkdir -p /export/apps/bedtools/2.29.0
$ make install prefix=/export/apps/bedtools/2.29.0
$ sudo chown -R root:root /export/apps/bedtools/2.29.0
bedtools-software.txt · Last modified: 2019/09/29 21:21 by aorth