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bedtools-software

bedtools

Bedtools is a fast, flexible toolset for genome arithmetic.

Information

Usage

See which versions of bedtools are available:

$ module avail bedtools

Load bedtools

$ module load bedtools/2.25.0

Installation

Notes from the sysadmin during installation:

$ cd /tmp/
$ wget https://github.com/arq5x/bedtools2/releases/download/v2.25.0/bedtools-2.25.0.tar.gz
$ tar -xvf bedtools-2.25.0.tar.gz
$ scl enable devtoolset-2 bash
$ sudo mkdir /export/apps/bedtools/2.25.0/
$ sudo chown -R joguya:joguya /export/apps/bedtools/2.25.0/
$ sed -i 's#prefix = /usr/local#prefix = /export/apps/bedtools/2.25.0#' Makefile
$ make
$ make install
$ sudo chown -R root:root /export/apps/bedtools/2.25.0/
bedtools-software.txt · Last modified: 2016/06/22 09:41 by joguya