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beast-software [2016/11/14 12:02]
joguya
beast-software [2019/11/11 15:46] (current)
aorth
Line 1: Line 1:
 ====== BEAST ====== ====== BEAST ======
- 
 BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences. BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences.
  
 ===== Information ===== ===== Information =====
  
-  * Version: 1.8.2+  * Version: 1.10.4
   * Added: August, 2014   * Added: August, 2014
-  * Updated: November2016 +  * Updated: September2019 
-  * Link: http://beast.bio.ed.ac.uk/+  * Link: http://beast.community/
  
 ===== Usage ===== ===== Usage =====
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 <code>$ module avail beast</code> <code>$ module avail beast</code>
  
-Load beast +Load one version into your environment and run it: 
-<code>$ module load beast/1.8.3</code>+<code>$ module load beast/1.10.
 +$ beast -h</code>
  
 +Note: Please use the ''-threads'' option to limit the number of threads launched by BEAST to be the same amount as in your SLURM sbatch allocation. See [[https://beast.community/performance|the documentation]] for more information. 
  
 ===== Installation ====== ===== Installation ======
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 <code>$ cd /tmp <code>$ cd /tmp
-$ wget https://github.com/beast-dev/beast-mcmc/releases/download/v1.8.3/BEASTv1.8.3.tgz +$ wget https://github.com/beast-dev/beast-mcmc/releases/download/v1.10.4/BEASTv1.10.4.tgz 
-$ tar -xvf BEASTv1.8.3.tgz  +$ tar xf BEASTv1.10.4.tgz 
-$ cd BEASTv1.8.3 +$ sudo cp -r BEASTv1.10.4 /export/apps/beast/1.10.4</code>
-$ sudo mkdir -p /export/apps/beast/1.8.3 +
-$ sudo cp -r . /export/apps/beast/1.8.3/ +
-</code>+
beast-software.1479124970.txt.gz · Last modified: 2016/11/14 12:02 by joguya