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beast-software [2015/03/16 06:55]
aorth
beast-software [2019/11/11 15:46] (current)
aorth
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 ===== Information ===== ===== Information =====
  
-  * Version: 1.8.2+  * Version: 1.10.4
   * Added: August, 2014   * Added: August, 2014
-  * Updated: March2015 +  * Updated: September2019 
-  * Link: http://beast.bio.ed.ac.uk/+  * Link: http://beast.community/
  
 ===== Usage ===== ===== Usage =====
  
-=== See versions of beast which are available === +See which versions of beast are available: 
-<code>module avail beast</code>+<code>module avail beast</code> 
 + 
 +Load one version into your environment and run it: 
 +<code>$ module load beast/1.10.4 
 +$ beast -h</code> 
 + 
 +Note: Please use the ''-threads'' option to limit the number of threads launched by BEAST to be the same amount as in your SLURM sbatch allocation. See [[https://beast.community/performance|the documentation]] for more information. 
  
 ===== Installation ====== ===== Installation ======
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 <code>$ cd /tmp <code>$ cd /tmp
-$ wget 'http://tree.bio.ed.ac.uk/download.php?id=92&num=3' -O BEASTv1.8.2.tgz +$ wget https://github.com/beast-dev/beast-mcmc/releases/download/v1.10.4/BEASTv1.10.4.tgz 
-$ tar xf BEASTv1.8.2.tgz  +$ tar xf BEASTv1.10.4.tgz 
-cd BEASTv1.8.+sudo cp -r BEASTv1.10./export/apps/beast/1.10.4</code>
-$ sudo mkdir /export/apps/beast/1.8.2 +
-$ sudo cp -rv * /export/apps/beast/1.8.2</code>+
beast-software.1426488937.txt.gz · Last modified: 2015/03/16 06:55 (external edit)