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beast-software [2015/03/16 09:55]
aorth
beast-software [2019/11/11 18:46] (current)
aorth
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 ===== Information ===== ===== Information =====
  
-  * Version: 1.8.2+  * Version: 1.10.4
   * Added: August, 2014   * Added: August, 2014
-  * Updated: ​March2015 +  * Updated: ​September2019 
-  * Link: http://​beast.bio.ed.ac.uk/+  * Link: http://​beast.community/
  
 ===== Usage ===== ===== Usage =====
  
-=== See versions of beast which are available ​=== +See which versions of beast are available: 
-<​code>​module avail beast</​code>​+<​code>​module avail beast</​code>​ 
 + 
 +Load one version into your environment and run it: 
 +<​code>​$ module load beast/​1.10.4 
 +$ beast -h</​code>​ 
 + 
 +Note: Please use the ''​-threads''​ option to limit the number of threads launched by BEAST to be the same amount as in your SLURM sbatch allocation. See [[https://​beast.community/​performance|the documentation]] for more information. ​
  
 ===== Installation ====== ===== Installation ======
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 <​code>​$ cd /tmp <​code>​$ cd /tmp
-$ wget 'http://tree.bio.ed.ac.uk/download.php?​id=92&​num=3'​ -O BEASTv1.8.2.tgz +$ wget https://github.com/​beast-dev/​beast-mcmc/​releases/​download/​v1.10.4/BEASTv1.10.4.tgz 
-$ tar xf BEASTv1.8.2.tgz  +$ tar xf BEASTv1.10.4.tgz 
-cd BEASTv1.8.+sudo cp -r BEASTv1.10./​export/​apps/​beast/​1.10.4</​code>​
-$ sudo mkdir /​export/​apps/​beast/​1.8.2 +
-$ sudo cp -rv * /​export/​apps/​beast/​1.8.2</​code>​+
beast-software.1426488937.txt.gz · Last modified: 2015/03/16 09:55 (external edit)