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beast-software [2014/08/28 09:55]
aorth created
beast-software [2019/11/11 18:46] (current)
aorth
Line 4: Line 4:
 ===== Information ===== ===== Information =====
  
-  * Version: 1.8.0+  * Version: 1.10.4
   * Added: August, 2014   * Added: August, 2014
-  * Link: http://​beast.bio.ed.ac.uk/+  ​* Updated: September, 2019 
 +  ​* Link: http://​beast.community/
  
 ===== Usage ===== ===== Usage =====
  
-=== See versions of beast which are available ​=== +See which versions of beast are available: 
-<​code>​module avail beast</​code>​+<​code>​module avail beast</​code>​ 
 + 
 +Load one version into your environment and run it: 
 +<​code>​$ module load beast/​1.10.4 
 +$ beast -h</​code>​ 
 + 
 +Note: Please use the ''​-threads''​ option to limit the number of threads launched by BEAST to be the same amount as in your SLURM sbatch allocation. See [[https://​beast.community/​performance|the documentation]] for more information. ​
  
 ===== Installation ====== ===== Installation ======
 Notes from the sysadmin during installation:​ Notes from the sysadmin during installation:​
  
-<​code>​wget ​http://​beast-mcmc.googlecode.com/files/BEASTv1.8.0.tgz +<​code>​$ cd /tmp 
-tar zxf BEASTv1.8.0.tgz +wget https://​github.com/​beast-dev/beast-mcmc/​releases/​download/​v1.10.4/BEASTv1.10.4.tgz 
-cd BEASTv1.8.0 +tar xf BEASTv1.10.4.tgz 
-sudo mkdir -p /​export/​apps/​beast/​1.8.+sudo cp -r BEASTv1.10./​export/​apps/​beast/​1.10.4</​code>​
-sudo cp -rv * /​export/​apps/​beast/​1.8.0/</​code>​+
beast-software.1409208926.txt.gz · Last modified: 2014/08/28 09:55 by aorth