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BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST.
See which versions of beagle are available:
$ module avail beagle
Load one version into your environment:
$ module load beagle/3.1.2
Beagle is not useful by itself, but you can use it to speed up BEAST.
Notes from the sysadmin during installation:
$ git clone https://github.com/beagle-dev/beagle-lib.git -b v3.1.2 $ cd beagle-lib $ sed -i 's/compute_30/compute_70/' configure.ac $ scl enable devtoolset-7 bash $ sudo yum install libtool $ ./autogen.sh $ ./configure --prefix=/export/apps/beagle/3.1.2 $ sudo mkdir -p /export/apps/beagle/3.1.2 $ sudo chown aorth /export/apps/beagle/3.1.2 $ make install $ sudo chown -R root:root /export/apps/beagle/3.1.2
Note (2021-06-21): Re-compiled on compute06 with support for NVIDIA GPU compute capability 7.0, but still seems to run on other nodes without modification.