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beagle-software [2015/08/03 16:08]
aorth created
beagle-software [2016/11/14 14:59] (current)
joguya
Line 1: Line 1:
-====== ​beagle ​======+====== ​Beagle ​====== 
 BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST. BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST.
  
 ===== Information ===== ===== Information =====
  
-  * Version: ​git-c455af1f+  * Latest ​Version: ​2.1.2
   * Added: August, 2015   * Added: August, 2015
 +  * Updated: November, 2016
   * Link: https://​github.com/​beagle-dev/​beagle-lib   * Link: https://​github.com/​beagle-dev/​beagle-lib
 +  ​
 ===== Usage ===== ===== Usage =====
  
-=== See versions of beagle ​which are available ​=== +See which versions of beagle are available: 
-<​code>​$ module avail beagle</​code>​+<​code>​$ module avail beagle 
 +</​code>​
  
-To use with BEAST, make sure beagle ​is loaded first!+Load beagle 
 +<​code>​$ module load beagle/​2.1.2</​code>​
  
 ===== Installation ====== ===== Installation ======
 +
 Notes from the sysadmin during installation:​ Notes from the sysadmin during installation:​
  
-<​code>​$ cd /tmp +<​code>​ 
-$ git clone https://​github.com/​beagle-dev/​beagle-lib.git +$ cd /tmp 
-$ cd beagle-lib+$ git clone --depth=1 ​https://​github.com/​beagle-dev/​beagle-lib.git 
 +$ cd beagle-lib
 +$ git checkout beagle_release_2_1_2
 $ scl enable devtoolset-2 bash $ scl enable devtoolset-2 bash
-$ ./​autogen.sh +$ module load java/1.8 
-./configure --prefix=/​export/​apps/​beagle/​git-c455af1f +$ ./​autogen.sh  
-$ sudo mkdir -p /​export/​apps/​beagle/​git-c455af1f +sudo mkdir /​export/​apps/​beagle/​2.1.2/ 
-sudo chown aorth /​export/​apps/​beagle/​git-c455af1f+$ sudo chown joguya:​joguya ​/​export/​apps/​beagle/​2.1.2/ 
 +./configure --prefix=/​export/​apps/​beagle/​2.1.2/
 $ make install $ make install
-$ sudo chown -R root:root /​export/​apps/​beagle/​git-c455af1f +$ sudo chown -R root:root /​export/​apps/​beagle/​2.1.2/ 
-$ exit</​code>​+</​code>​
beagle-software.txt · Last modified: 2016/11/14 14:59 by joguya