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beagle-software [2016/11/14 11:59]
joguya
beagle-software [2019/09/29 19:35] (current)
aorth
Line 1: Line 1:
 ====== Beagle ====== ====== Beagle ======
- 
 BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST. BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST.
  
 ===== Information ===== ===== Information =====
  
-  * Latest Version: 2.1.2+  * Latest Version: 3.1.2
   * Added: August, 2015   * Added: August, 2015
-  * Updated: November2016+  * Updated: September2019
   * Link: https://github.com/beagle-dev/beagle-lib   * Link: https://github.com/beagle-dev/beagle-lib
      
Line 13: Line 12:
  
 See which versions of beagle are available: See which versions of beagle are available:
-<code>$ module avail beagle +<code>$ module avail beagle</code>
-</code>+
  
-Load beagle +Load one version into your environment: 
-<code>$ module load beagle/2.1.2</code>+<code>$ module load beagle/3.1.2</code> 
 + 
 +Beagle is not useful by itself, but you can use it to speed up [[https://hpc.ilri.cgiar.org/beast-software|BEAST]].
  
 ===== Installation ====== ===== Installation ======
- 
 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code> +<code>$ cd /tmp 
-$ cd /tmp +wget https://github.com/beagle-dev/beagle-lib/archive/v3.1.2.tar.gz 
-git clone --depth=1 https://github.com/beagle-dev/beagle-lib.git +$ tar xf v3.1.2.tar.gz  
-$ cd beagle-lib+$ cd beagle-lib-3.1.2 
-$ git checkout beagle_release_2_1_2 +$ scl enable devtoolset-bash 
-$ scl enable devtoolset-bash +$ ./autogen.sh 
-$ module load java/1.8 +./configure --prefix=/export/apps/beagle/3.1.2 
-$ ./autogen.sh  +$ sudo mkdir -p /export/apps/beagle/3.1.2 
-sudo mkdir /export/apps/beagle/2.1.2/ +sudo chown aorth /export/apps/beagle/3.1.2
-$ sudo chown joguya:joguya /export/apps/beagle/2.1.2/ +
-./configure --prefix=/export/apps/beagle/2.1.2/+
 $ make install $ make install
-$ sudo chown -R root:root /export/apps/beagle/2.1.2+$ sudo chown -R root:root /export/apps/beagle/3.1.2</code>
-</code>+
beagle-software.1479124786.txt.gz · Last modified: 2016/11/14 11:59 by joguya