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beagle-software [2015/08/03 16:08]
aorth created
beagle-software [2019/09/29 22:35] (current)
aorth
Line 1: Line 1:
-====== ​beagle ​======+====== ​Beagle ​======
 BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST. BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST.
  
 ===== Information ===== ===== Information =====
  
-  * Version: ​git-c455af1f+  * Latest ​Version: ​3.1.2
   * Added: August, 2015   * Added: August, 2015
 +  * Updated: September, 2019
   * Link: https://​github.com/​beagle-dev/​beagle-lib   * Link: https://​github.com/​beagle-dev/​beagle-lib
 +  ​
 ===== Usage ===== ===== Usage =====
  
-=== See versions of beagle ​which are available ​===+See which versions of beagle are available:
 <​code>​$ module avail beagle</​code>​ <​code>​$ module avail beagle</​code>​
  
-To use with BEAST, make sure beagle is loaded first!+Load one version into your environment:​ 
 +<​code>​$ module load beagle/​3.1.2</​code>​ 
 + 
 +Beagle ​is not useful by itself, but you can use it to speed up [[https://​hpc.ilri.cgiar.org/​beast-software|BEAST]].
  
 ===== Installation ====== ===== Installation ======
Line 19: Line 23:
  
 <​code>​$ cd /tmp <​code>​$ cd /tmp
-git clone https://​github.com/​beagle-dev/​beagle-lib.git +wget https://​github.com/​beagle-dev/​beagle-lib/​archive/​v3.1.2.tar.gz 
-$ cd beagle-lib +$ tar xf v3.1.2.tar.gz ​ 
-$ scl enable devtoolset-bash+$ cd beagle-lib-3.1.2 
 +$ scl enable devtoolset-bash
 $ ./​autogen.sh $ ./​autogen.sh
-$ ./configure --prefix=/​export/​apps/​beagle/​git-c455af1f +$ ./configure --prefix=/​export/​apps/​beagle/​3.1.2 
-$ sudo mkdir -p /​export/​apps/​beagle/​git-c455af1f +$ sudo mkdir -p /​export/​apps/​beagle/​3.1.2 
-$ sudo chown aorth /​export/​apps/​beagle/​git-c455af1f+$ sudo chown aorth /​export/​apps/​beagle/​3.1.2
 $ make install $ make install
-$ sudo chown -R root:root /​export/​apps/​beagle/​git-c455af1f +$ sudo chown -R root:root /​export/​apps/​beagle/​3.1.2</​code>​
-$ exit</​code>​+
beagle-software.1438607313.txt.gz · Last modified: 2015/08/03 16:08 by aorth