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beagle-software [2015/08/03 13:08]
aorth created
beagle-software [2019/09/29 19:35] (current)
aorth
Line 1: Line 1:
-====== beagle ======+====== Beagle ======
 BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST. BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST.
  
 ===== Information ===== ===== Information =====
  
-  * Version: git-c455af1f+  * Latest Version: 3.1.2
   * Added: August, 2015   * Added: August, 2015
 +  * Updated: September, 2019
   * Link: https://github.com/beagle-dev/beagle-lib   * Link: https://github.com/beagle-dev/beagle-lib
 +  
 ===== Usage ===== ===== Usage =====
  
-=== See versions of beagle which are available ===+See which versions of beagle are available:
 <code>$ module avail beagle</code> <code>$ module avail beagle</code>
  
-To use with BEAST, make sure beagle is loaded first!+Load one version into your environment: 
 +<code>$ module load beagle/3.1.2</code> 
 + 
 +Beagle is not useful by itself, but you can use it to speed up [[https://hpc.ilri.cgiar.org/beast-software|BEAST]].
  
 ===== Installation ====== ===== Installation ======
Line 19: Line 23:
  
 <code>$ cd /tmp <code>$ cd /tmp
-git clone https://github.com/beagle-dev/beagle-lib.git +wget https://github.com/beagle-dev/beagle-lib/archive/v3.1.2.tar.gz 
-$ cd beagle-lib +$ tar xf v3.1.2.tar.gz  
-$ scl enable devtoolset-bash+$ cd beagle-lib-3.1.2 
 +$ scl enable devtoolset-bash
 $ ./autogen.sh $ ./autogen.sh
-$ ./configure --prefix=/export/apps/beagle/git-c455af1f +$ ./configure --prefix=/export/apps/beagle/3.1.2 
-$ sudo mkdir -p /export/apps/beagle/git-c455af1f +$ sudo mkdir -p /export/apps/beagle/3.1.2 
-$ sudo chown aorth /export/apps/beagle/git-c455af1f+$ sudo chown aorth /export/apps/beagle/3.1.2
 $ make install $ make install
-$ sudo chown -R root:root /export/apps/beagle/git-c455af1f +$ sudo chown -R root:root /export/apps/beagle/3.1.2</code>
-$ exit</code>+
beagle-software.1438607313.txt.gz · Last modified: 2015/08/03 13:08 by aorth